Index

A

affix_nwbseries_to_nwbfile() (managers.operatorsTranscribe.fabricator.Fabricator class method) an_epoch() (managers.operatorsTranscribe.metadata_epochgenerator.EpochGenerator class method)

an_epoch_stimulus_window() (managers.operatorsTranscribe.metadata_epochgenerator.EpochGenerator static method) available_modelscales() (managers.filing.FilingManager static method)

B

build_nwbepochs() (managers.operatorsTranscribe.fabricator.Fabricator class method)

build_nwbfile() (managers.operatorsTranscribe.fabricator.Fabricator class method) build_nwbseries() (managers.operatorsTranscribe.fabricator.Fabricator class method)

C

cellrecordings_response() (managers.operatorsTranscribe.metadata_timeseriesgenerator.TimeseriesGenerator static method) compile_nwbfile() (managers.transcribe.TranscribeManager method) compute_totalepochs_per_cellregion() (managers.operatorsTranscribe.metadata_epochgenerator.EpochGenerator static method)

construct_nwbseries_nostimulus() (managers.operatorsTranscribe.fabricator.Fabricator class method) Converter (class in managers.operatorsSignaling.converter) Crawler (class in managers.operatorsFiling.crawler)

D

data_for_epoch() (managers.read.ReadManager static method)

determine_signalsign_from_threshold() (managers.operatorsSignaling.converter.Converter static method)

E

epochcontainer() (managers.operatorsTranscribe.metadata_epochgenerator.EpochGenerator class method)

EpochGenerator (class in managers.operatorsTranscribe.metadata_epochgenerator) EpochUnraveller (class in managers.operatorsReadNWB.epoch_unraveller)

F

Fabricator (class in managers.operatorsTranscribe.fabricator) FileGenerator (class in managers.operatorsTranscribe.metadata_filegenerator) FilingManager (class in managers.filing) forcellrecording() (managers.operatorsTranscribe.metadata_timeseriesgenerator.TimeseriesGenerator class method)

forcellrecordings_nostimulus() (managers.operatorsTranscribe.metadata_timeseriesgenerator.TimeseriesGenerator class method) forcellrecordings_stimulus() (managers.operatorsTranscribe.metadata_timeseriesgenerator.TimeseriesGenerator class method) forepoch() (managers.operatorsTranscribe.metadata_epochgenerator.EpochGenerator class method) forfile() (managers.operatorsTranscribe.metadata_filegenerator.FileGenerator class method) forrecording() (managers.operatorsTranscribe.metadata_timeseriesgenerator.TimeseriesGenerator class method)

G

generic_timeseries() (managers.operatorsTranscribe.fabricator.Fabricator static method) get_institution() (managers.operatorsTranscribe.metadata_filegenerator.FileGenerator static method) get_labname() (managers.operatorsTranscribe.metadata_filegenerator.FileGenerator static method)

get_modelID() (managers.operatorsTranscribe.metadata_filegenerator.FileGenerator static method) get_responsepath_check_create() (managers.filing.FilingManager static method) get_testdescription() (managers.operatorsTranscribe.metadata_filegenerator.FileGenerator static method) get_username() (managers.operatorsTranscribe.metadata_filegenerator.FileGenerator static method)

H

hatch_path_to_nmodl() (managers.operatorsFiling.pathspawner.PathSpawner static method)

hatch_path_to_response() (managers.operatorsFiling.pathspawner.PathSpawner static method)

I

indices_tseries_for_epoch() (managers.operatorsTranscribe.fabricator.Fabricator static method)

insert_a_nwbepoch() (managers.operatorsTranscribe.fabricator.Fabricator class method)

L

link_nwbseriesresponses_to_nwbfile() (managers.operatorsTranscribe.fabricator.Fabricator static method) list_dirs() (managers.operatorsFiling.crawler.Crawler class method)

load_metadata() (managers.transcribe.TranscribeManager method) load_nwbfile() (managers.read.ReadManager static method)

M

managers.filing (module) managers.operatorsFiling.crawler (module) managers.operatorsFiling.pathspawner (module) managers.operatorsReadNWB.epoch_unraveller (module) managers.operatorsSignaling.converter (module) managers.operatorsTranscribe.fabricator (module)

managers.operatorsTranscribe.metadata_epochgenerator (module) managers.operatorsTranscribe.metadata_filegenerator (module) managers.operatorsTranscribe.metadata_timeseriesgenerator (module) managers.read (module) managers.signalprocessing (module) managers.transcribe (module) modelscale_inventory() (managers.filing.FilingManager static method)

O

order_all_epochs_for_region() (managers.read.ReadManager static method)

P

path_to_dir() (managers.operatorsFiling.crawler.Crawler class method) path_to_file() (managers.operatorsFiling.crawler.Crawler class method) PathSpawner (class in managers.operatorsFiling.pathspawner) pluck_epoch_id() (managers.operatorsReadNWB.epoch_unraveller.EpochUnraveller static method) pluck_epoch_row() (managers.operatorsReadNWB.epoch_unraveller.EpochUnraveller static method) pluck_modelname() (managers.operatorsReadNWB.epoch_unraveller.EpochUnraveller static method)

pluck_modelscale() (managers.operatorsReadNWB.epoch_unraveller.EpochUnraveller static method) pluck_region() (managers.operatorsReadNWB.epoch_unraveller.EpochUnraveller static method) pluck_start_time() (managers.operatorsReadNWB.epoch_unraveller.EpochUnraveller static method) pluck_stop_time() (managers.operatorsReadNWB.epoch_unraveller.EpochUnraveller static method) pluck_timeseries_object() (managers.operatorsReadNWB.epoch_unraveller.EpochUnraveller static method) pull_all_epochs_for_region() (managers.operatorsReadNWB.epoch_unraveller.EpochUnraveller class method) pull_indices_tseries_for_epoch() (managers.operatorsReadNWB.epoch_unraveller.EpochUnraveller class method)

R

ReadManager (class in managers.read) recordings_cell_currentstimulus() (managers.operatorsTranscribe.metadata_timeseriesgenerator.TimeseriesGenerator static method)

recordings_cellstimulus() (managers.operatorsTranscribe.metadata_timeseriesgenerator.TimeseriesGenerator class method) responsepath_check_create() (managers.filing.FilingManager class method)

S

save_nwbfile() (managers.transcribe.TranscribeManager method) search_and_find() (managers.operatorsFiling.crawler.Crawler static method) show_filenames_with_path() (managers.filing.FilingManager static method) show_files() (managers.operatorsFiling.crawler.Crawler class method)

show_files_with_path() (managers.operatorsFiling.crawler.Crawler static method) SignalProcessingManager (class in managers.signalprocessing) smoke_out() (managers.operatorsFiling.crawler.Crawler static method) strip_out_stimulus_from_nwbseries() (managers.operatorsTranscribe.fabricator.Fabricator static method)

T

TimeseriesGenerator (class in managers.operatorsTranscribe.metadata_timeseriesgenerator) timestamps_for_epoch() (managers.read.ReadManager static method) total_epochIDs() (managers.read.ReadManager static method) total_epochs_this_region() (managers.operatorsReadNWB.epoch_unraveller.EpochUnraveller static method)

total_overall_epochs() (managers.operatorsReadNWB.epoch_unraveller.EpochUnraveller static method) TranscribeManager (class in managers.transcribe) transform_signal() (managers.signalprocessing.SignalProcessingManager static method) tseries_for_epoch() (managers.operatorsTranscribe.fabricator.Fabricator class method)

V

voltage_to_spiketrain() (managers.operatorsSignaling.converter.Converter class method)

W

write_nwbfile() (managers.operatorsTranscribe.fabricator.Fabricator class method)